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Volume: 65 | Article ID: jist1130
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SWACG: A Hybrid Neural Network Integrating Sliding Window for Biomedical Event Trigger Extraction
  DOI :  10.2352/J.ImagingSci.Technol.2021.65.6.060502  Published OnlineNovember 2021
Abstract
Abstract

As an important part of biomedical text mining, biomedical events play a key role in improving biomedical research and disease prevention. Trigger identification, extracting the words describing the event types, is a critical and prerequisite step for biomedical event extraction. Traditional methods excessively rely on natural language processing tools in the feature extraction process, incurring a significant manual cost. In addition, because of the particularity of the biomedical literature, the problem of long-distance dependency is obvious. To solve these problems, we propose a hybrid structure SWACG, which consists of the ReCNN-BiGRU (Residual CNN and Bidirectional Gated Recurrent Unit) hybrid neural network and MH-attention (Multi-Head attention) mechanism. The proposed model uses ReCNN to extract vocabulary-level features and BiGRU to obtain contextual semantic information. Furthermore, sliding window divides long sentences into equal-length short sentences without destroying context information, which can avoid long-distance dependency. Experimental results show that our method advances the state-of-the-art performance on the commonly used Multi-Level Event Extraction (MLEE) corpus, achieving 82.20% F-score.

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  Cite this article 

Xinyu He, Bo Yu, Yonggong Ren, "SWACG: A Hybrid Neural Network Integrating Sliding Window for Biomedical Event Trigger Extractionin Journal of Imaging Science and Technology,  2021,  pp 060502-1 - 060502-13,  https://doi.org/10.2352/J.ImagingSci.Technol.2021.65.6.060502

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Copyright © Society for Imaging Science and Technology 2021
  Article timeline 
  • received April 2021
  • accepted August 2021
  • PublishedNovember 2021

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